PICCOLO White-Light and Narrow-Band Imaging Colonoscopic Dataset: A Performance Comparative of Models and Datasets: A performance comparative of models and datasets

Luisa F. Sánchez-Peralta, J. Blas Pagador, Artzai Picón, Ángel José Calderón, Francisco Polo, Nagore Andraka, Roberto Bilbao, Ben Glover, Cristina L. Saratxaga, Francisco M. Sánchez-Margallo

Research output: Contribution to journalArticlepeer-review

40 Citations (Scopus)

Abstract

Colorectal cancer is one of the world leading death causes. Fortunately, an early diagnosis allows for effective treatment, increasing the survival rate. Deep learning techniques have shown their utility for increasing the adenoma detection rate at colonoscopy, but a dataset is usually required so the model can automatically learn features that characterize the polyps. In this work, we present the PICCOLO dataset, that comprises 3433 manually annotated images (2131 white-light images 1302 narrow-band images), originated from 76 lesions from 40 patients, which are distributed into training (2203), validation (897) and test (333) sets assuring patient independence between sets. Furthermore, clinical metadata are also provided for each lesion. Four different models, obtained by combining two backbones and two encoder–decoder architectures, are trained with the PICCOLO dataset and other two publicly available datasets for comparison. Results are provided for the test set of each dataset. Models trained with the PICCOLO dataset have a better generalization capacity, as they perform more uniformly along test sets of all datasets, rather than obtaining the best results for its own test set. This dataset is available at the website of the Basque Biobank, so it is expected that it will contribute to the further development of deep learning methods for polyp detection, localisation and classification, which would eventually result in a better and earlier diagnosis of colorectal cancer, hence improving patient outcomes.

Original languageEnglish
Article number8501
Pages (from-to)1-14
Number of pages14
JournalApplied Sciences (Switzerland)
Volume10
Issue number23
DOIs
Publication statusPublished - 28 Nov 2020

Keywords

  • Binary masks
  • Clinical metadata
  • Colonoscopy
  • Colorectal cancer
  • Deep learning
  • Detection
  • Localisation
  • Polyps
  • Public dataset
  • Segmentation

Project and Funding Information

  • Project ID
  • info:eu-repo/grantAgreement/EC/H2020/732111/EU/Multimodal highly-sensitive PhotonICs endoscope for improved in-vivo COLOn Cancer diagnosis and clinical decision support/PICCOLO
  • Funding Info
  • This work was partially supported by PICCOLO project. This project has received funding from the European Union’s Horizon2020 research and innovation programme under grant agreement No 732111._x000D_Furthermore, this publication has also been partially supported_x000D_by GR18199 from Consejería de Economía, Ciencia y Agenda Digital of Junta de Extremadura (co-funded by_x000D_European Regional Development Fund–ERDF. “A way to make Europe”/ “Investing in your future”. This work_x000D_has been performed by the ICTS “NANBIOSIS” at the Jesús Usón Minimally Invasive Surgery Centre.

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